## ─ Session info ────────────────────────────────────────────────────────────
## setting value
## version R Under development (unstable) (2025-02-24 r87814)
## os Ubuntu 24.04.1 LTS
## system x86_64, linux-gnu
## ui X11
## language (EN)
## collate C
## ctype en_US.UTF-8
## tz Etc/UTC
## date 2025-03-12
## pandoc 3.6.3 @ /usr/bin/ (via rmarkdown)
## quarto 1.5.57 @ /usr/local/bin/quarto
##
## ─ Packages ────────────────────────────────────────────────────────────────
## package * version date (UTC) lib source
## abind 1.4-8 2024-09-12 [2] CRAN (R 4.5.0)
## ALL 1.49.0 2024-10-31 [2] Bioconductor 3.21 (R 4.5.0)
## annotate 1.85.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## AnnotationDbi 1.69.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## AnnotationHub 3.15.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## ape 5.8-1 2024-12-16 [2] CRAN (R 4.5.0)
## aplot 0.2.5 2025-02-27 [2] CRAN (R 4.5.0)
## aricode 1.0.3 2023-10-20 [2] CRAN (R 4.5.0)
## arrow 19.0.1 2025-02-26 [2] CRAN (R 4.5.0)
## ash 1.0-15 2015-09-01 [2] CRAN (R 4.5.0)
## askpass 1.2.1 2024-10-04 [2] CRAN (R 4.5.0)
## assertthat 0.2.1 2019-03-21 [2] CRAN (R 4.5.0)
## assorthead 1.1.16 2025-03-06 [2] Bioconductor 3.21 (R 4.5.0)
## attempt 0.3.1 2020-05-03 [2] CRAN (R 4.5.0)
## AUCell 1.29.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## babelgene 22.9 2022-09-29 [2] CRAN (R 4.5.0)
## backports 1.5.0 2024-05-23 [2] CRAN (R 4.5.0)
## Banksy 1.3.0 2024-11-01 [2] Bioconductor 3.21 (R 4.5.0)
## base * 4.5.0 2025-02-25 [3] local
## base64enc 0.1-3 2015-07-28 [2] CRAN (R 4.5.0)
## basilisk 1.19.1 2025-02-12 [2] Bioconductor 3.21 (R 4.5.0)
## basilisk.utils 1.19.1 2025-02-12 [2] Bioconductor 3.21 (R 4.5.0)
## BayesSpace 1.17.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## beachmat 2.23.6 2024-12-22 [2] Bioconductor 3.21 (R 4.5.0)
## beeswarm 0.4.0 2021-06-01 [2] CRAN (R 4.5.0)
## benchmarkme 1.0.8 2022-06-12 [2] CRAN (R 4.5.0)
## benchmarkmeData 1.0.4 2020-04-23 [2] CRAN (R 4.5.0)
## BH 1.87.0-1 2024-12-17 [2] CRAN (R 4.5.0)
## Biobase 2.67.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## BiocBaseUtils 1.9.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## BiocFileCache 2.15.1 2025-01-17 [2] Bioconductor 3.21 (R 4.5.0)
## BiocGenerics 0.53.6 2025-01-27 [2] Bioconductor 3.21 (R 4.5.0)
## BiocIO 1.17.1 2024-11-21 [2] Bioconductor 3.21 (R 4.5.0)
## BiocManager 1.30.25 2024-08-28 [2] CRAN (R 4.5.0)
## BiocNeighbors 2.1.3 2025-03-05 [2] Bioconductor 3.21 (R 4.5.0)
## BiocParallel 1.41.2 2025-02-19 [2] Bioconductor 3.21 (R 4.5.0)
## BiocSingular 1.23.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## BiocStyle 2.35.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## BiocVersion 3.21.1 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## Biostrings 2.75.4 2025-02-21 [2] Bioconductor 3.21 (R 4.5.0)
## bit 4.6.0 2025-03-06 [2] CRAN (R 4.5.0)
## bit64 4.6.0-1 2025-01-16 [2] CRAN (R 4.5.0)
## bitops 1.0-9 2024-10-03 [2] CRAN (R 4.5.0)
## blob 1.2.4 2023-03-17 [2] CRAN (R 4.5.0)
## bluster 1.17.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## bookdown 0.42 2025-01-07 [2] CRAN (R 4.5.0)
## boot 1.3-31 2024-08-28 [3] CRAN (R 4.5.0)
## brew 1.0-10 2023-12-16 [2] CRAN (R 4.5.0)
## brio 1.1.5 2024-04-24 [2] CRAN (R 4.5.0)
## BRISC 1.0.6 2024-10-02 [2] CRAN (R 4.5.0)
## broom 1.0.7 2024-09-26 [2] CRAN (R 4.5.0)
## bslib 0.9.0 2025-01-30 [2] CRAN (R 4.5.0)
## cachem 1.1.0 2024-05-16 [2] CRAN (R 4.5.0)
## Cairo 1.6-2 2023-11-28 [2] CRAN (R 4.5.0)
## callr 3.7.6 2024-03-25 [2] CRAN (R 4.5.0)
## car 3.1-3 2024-09-27 [2] CRAN (R 4.5.0)
## carData 3.0-5 2022-01-06 [2] CRAN (R 4.5.0)
## circlize 0.4.16 2024-02-20 [2] CRAN (R 4.5.0)
## class 7.3-23 2025-01-01 [3] CRAN (R 4.5.0)
## classInt 0.4-11 2025-01-08 [2] CRAN (R 4.5.0)
## cli 3.6.4 2025-02-13 [2] CRAN (R 4.5.0)
## clipr 0.8.0 2022-02-22 [2] CRAN (R 4.5.0)
## clue 0.3-66 2024-11-13 [2] CRAN (R 4.5.0)
## cluster 2.1.8 2024-12-11 [3] CRAN (R 4.5.0)
## coda 0.19-4.1 2024-01-31 [2] CRAN (R 4.5.0)
## codetools 0.2-20 2024-03-31 [3] CRAN (R 4.5.0)
## colorRamps 2.3.4 2024-03-07 [2] CRAN (R 4.5.0)
## colorspace 2.1-1 2024-07-26 [2] CRAN (R 4.5.0)
## cols4all 0.8 2024-10-16 [2] CRAN (R 4.5.0)
## commonmark 1.9.2 2024-10-04 [2] CRAN (R 4.5.0)
## compiler 4.5.0 2025-02-25 [3] local
## ComplexHeatmap 2.23.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## concaveman 1.1.0 2020-05-11 [2] CRAN (R 4.5.0)
## config 0.3.2 2023-08-30 [2] CRAN (R 4.5.0)
## ConsensusClusterPlus 1.71.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## corrplot 0.95 2024-10-14 [2] CRAN (R 4.5.0)
## cowplot 1.1.3 2024-01-22 [2] CRAN (R 4.5.0)
## cpp11 0.5.2 2025-03-03 [2] CRAN (R 4.5.0)
## crayon 1.5.3 2024-06-20 [2] CRAN (R 4.5.0)
## credentials 2.0.2 2024-10-04 [2] CRAN (R 4.5.0)
## crosstalk 1.2.1 2023-11-23 [2] CRAN (R 4.5.0)
## crul 1.5.0 2024-07-19 [2] CRAN (R 4.5.0)
## curl 6.2.1 2025-02-19 [2] CRAN (R 4.5.0)
## cytolib 2.19.3 2025-01-29 [2] Bioconductor 3.21 (R 4.5.0)
## cytomapper 1.19.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## data.table 1.17.0 2025-02-22 [2] CRAN (R 4.5.0)
## datasets * 4.5.0 2025-02-25 [3] local
## DBI 1.2.3 2024-06-02 [2] CRAN (R 4.5.0)
## dbplyr 2.5.0 2024-03-19 [2] CRAN (R 4.5.0)
## dbscan 1.2.2 2025-01-26 [2] CRAN (R 4.5.0)
## DelayedArray 0.33.6 2025-02-14 [2] Bioconductor 3.21 (R 4.5.0)
## DelayedMatrixStats 1.29.1 2025-01-09 [2] Bioconductor 3.21 (R 4.5.0)
## deldir 2.0-4 2024-02-28 [2] CRAN (R 4.5.0)
## DEoptimR 1.1-3-1 2024-11-23 [2] CRAN (R 4.5.0)
## Deriv 4.1.6 2024-09-13 [2] CRAN (R 4.5.0)
## desc 1.4.3 2023-12-10 [2] CRAN (R 4.5.0)
## deSolve 1.40 2023-11-27 [2] CRAN (R 4.5.0)
## DESpace 1.7.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## devtools 2.4.5 2022-10-11 [2] CRAN (R 4.5.0)
## dichromat 2.0-0.1 2022-05-02 [2] CRAN (R 4.5.0)
## diffcyt 1.27.3 2025-02-09 [2] Bioconductor 3.21 (R 4.5.0)
## diffobj 0.3.5 2021-10-05 [2] CRAN (R 4.5.0)
## digest 0.6.37 2024-08-19 [2] CRAN (R 4.5.0)
## dir.expiry 1.15.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## DirichletReg 0.7-1 2021-05-18 [2] CRAN (R 4.5.0)
## distances 0.1.11 2024-07-31 [2] CRAN (R 4.5.0)
## doBy 4.6.25 2025-01-30 [2] CRAN (R 4.5.0)
## docopt 0.7.1 2020-06-24 [2] CRAN (R 4.5.0)
## doMC 1.3.8 2022-02-05 [2] CRAN (R 4.5.0)
## doParallel 1.0.17 2022-02-07 [2] CRAN (R 4.5.0)
## downlit 0.4.4 2024-06-10 [2] CRAN (R 4.5.0)
## dplyr 1.1.4 2023-11-17 [2] CRAN (R 4.5.0)
## dqrng 0.4.1 2024-05-28 [2] CRAN (R 4.5.0)
## DropletUtils 1.27.2 2024-12-18 [2] Bioconductor 3.21 (R 4.5.0)
## DT 0.33 2024-04-04 [2] CRAN (R 4.5.0)
## e1071 1.7-16 2024-09-16 [2] CRAN (R 4.5.0)
## EBImage 4.49.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## edgeR 4.5.8 2025-03-06 [2] Bioconductor 3.21 (R 4.5.0)
## ellipsis 0.3.2 2021-04-29 [2] CRAN (R 4.5.0)
## escheR 1.7.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## evaluate 1.0.3 2025-01-10 [2] CRAN (R 4.5.0)
## ExperimentHub 2.15.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## fansi 1.0.6 2023-12-08 [2] CRAN (R 4.5.0)
## farver 2.1.2 2024-05-13 [2] CRAN (R 4.5.0)
## fastmap 1.2.0 2024-05-15 [2] CRAN (R 4.5.0)
## fda 6.2.0 2024-09-17 [2] CRAN (R 4.5.0)
## fds 1.8 2018-10-31 [2] CRAN (R 4.5.0)
## fftwtools 0.9-11 2021-03-01 [2] CRAN (R 4.5.0)
## filelock 1.0.3 2023-12-11 [2] CRAN (R 4.5.0)
## flowCore 2.19.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## FlowSOM 2.15.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## FNN 1.1.4.1 2024-09-22 [2] CRAN (R 4.5.0)
## fontawesome 0.5.3 2024-11-16 [2] CRAN (R 4.5.0)
## foreach 1.5.2 2022-02-02 [2] CRAN (R 4.5.0)
## foreign 0.8-88 2025-01-12 [3] CRAN (R 4.5.0)
## formatR 1.14 2023-01-17 [2] CRAN (R 4.5.0)
## Formula 1.2-5 2023-02-24 [2] CRAN (R 4.5.0)
## fs 1.6.5 2024-10-30 [2] CRAN (R 4.5.0)
## futile.logger 1.4.3 2016-07-10 [2] CRAN (R 4.5.0)
## futile.options 1.0.1 2018-04-20 [2] CRAN (R 4.5.0)
## gamm4 0.2-6 2020-04-03 [2] CRAN (R 4.5.0)
## generics 0.1.3 2022-07-05 [2] CRAN (R 4.5.0)
## GenomeInfoDb 1.43.4 2025-01-24 [2] Bioconductor 3.21 (R 4.5.0)
## GenomeInfoDbData 1.2.13 2025-03-12 [2] Bioconductor
## GenomicAlignments 1.43.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## GenomicRanges 1.59.1 2024-11-15 [2] Bioconductor 3.21 (R 4.5.0)
## geojsonsf 2.0.3 2022-05-30 [2] CRAN (R 4.5.0)
## geometries 0.2.4 2024-01-15 [2] CRAN (R 4.5.0)
## gert 2.1.4 2024-10-14 [2] CRAN (R 4.5.0)
## GetoptLong 1.0.5 2020-12-15 [2] CRAN (R 4.5.0)
## ggbeeswarm 0.7.2 2023-04-29 [2] CRAN (R 4.5.0)
## ggforce 0.4.2 2024-02-19 [2] CRAN (R 4.5.0)
## ggfun 0.1.8 2024-12-03 [2] CRAN (R 4.5.0)
## ggiraph 0.8.12 2025-01-08 [2] CRAN (R 4.5.0)
## ggnewscale 0.5.1 2025-02-24 [2] CRAN (R 4.5.0)
## ggplot2 3.5.1 2024-04-23 [2] CRAN (R 4.5.0)
## ggplotify 0.1.2 2023-08-09 [2] CRAN (R 4.5.0)
## ggpubr 0.6.0 2023-02-10 [2] CRAN (R 4.5.0)
## ggraph 2.2.1 2024-03-07 [2] CRAN (R 4.5.0)
## ggrastr 1.0.2 2023-06-01 [2] CRAN (R 4.5.0)
## ggrepel 0.9.6 2024-09-07 [2] CRAN (R 4.5.0)
## ggsci 3.2.0 2024-06-18 [2] CRAN (R 4.5.0)
## ggside 0.3.1 2024-03-01 [2] CRAN (R 4.5.0)
## ggsignif 0.6.4 2022-10-13 [2] CRAN (R 4.5.0)
## ggspavis 1.13.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## ggtree 3.15.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## gh 1.4.1 2024-03-28 [2] CRAN (R 4.5.0)
## gitcreds 0.1.2 2022-09-08 [2] CRAN (R 4.5.0)
## GlobalOptions 0.1.2 2020-06-10 [2] CRAN (R 4.5.0)
## glue 1.8.0 2024-09-30 [2] CRAN (R 4.5.0)
## goftest 1.2-3 2021-10-07 [2] CRAN (R 4.5.0)
## golem 0.5.1 2024-08-27 [2] CRAN (R 4.5.0)
## graph 1.85.1 2024-12-31 [2] Bioconductor 3.21 (R 4.5.0)
## graphics * 4.5.0 2025-02-25 [3] local
## graphlayouts 1.2.2 2025-01-23 [2] CRAN (R 4.5.0)
## grDevices * 4.5.0 2025-02-25 [3] local
## grid 4.5.0 2025-02-25 [3] local
## gridExtra 2.3 2017-09-09 [2] CRAN (R 4.5.0)
## gridGraphics 0.5-1 2020-12-13 [2] CRAN (R 4.5.0)
## grpreg 3.5.0 2024-09-03 [2] CRAN (R 4.5.0)
## GSEABase 1.69.1 2025-02-10 [2] Bioconductor 3.21 (R 4.5.0)
## gtable 0.3.6 2024-10-25 [2] CRAN (R 4.5.0)
## h5mread 0.99.4 2025-01-22 [2] Bioconductor 3.21 (R 4.5.0)
## harmony 1.2.3 2024-11-27 [2] CRAN (R 4.5.0)
## HDF5Array 1.35.15 2025-02-19 [2] Bioconductor 3.21 (R 4.5.0)
## hdrcde 3.4 2021-01-18 [2] CRAN (R 4.5.0)
## here 1.0.1 2020-12-13 [2] CRAN (R 4.5.0)
## highr 0.11 2024-05-26 [2] CRAN (R 4.5.0)
## hms 1.1.3 2023-03-21 [2] CRAN (R 4.5.0)
## hoodscanR 1.5.2 2025-02-09 [2] Bioconductor 3.21 (R 4.5.0)
## hopach 2.67.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## htmltools 0.5.8.1 2024-04-04 [2] CRAN (R 4.5.0)
## htmlwidgets 1.6.4 2023-12-06 [2] CRAN (R 4.5.0)
## httpcode 0.3.0 2020-04-10 [2] CRAN (R 4.5.0)
## httpuv 1.6.15 2024-03-26 [2] CRAN (R 4.5.0)
## httr 1.4.7 2023-08-15 [2] CRAN (R 4.5.0)
## httr2 1.1.0 2025-01-18 [2] CRAN (R 4.5.0)
## igraph 2.1.4 2025-01-23 [2] CRAN (R 4.5.0)
## imcRtools 1.13.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## ini 0.3.1 2018-05-20 [2] CRAN (R 4.5.0)
## IRanges 2.41.3 2025-02-12 [2] Bioconductor 3.21 (R 4.5.0)
## irlba 2.3.5.1 2022-10-03 [2] CRAN (R 4.5.0)
## isoband 0.2.7 2022-12-20 [2] CRAN (R 4.5.0)
## iterators 1.0.14 2022-02-05 [2] CRAN (R 4.5.0)
## jpeg 0.1-10 2022-11-29 [2] CRAN (R 4.5.0)
## jquerylib 0.1.4 2021-04-26 [2] CRAN (R 4.5.0)
## jsonify 1.2.2 2022-11-09 [2] CRAN (R 4.5.0)
## jsonlite 1.9.1 2025-03-03 [2] CRAN (R 4.5.0)
## KEGGREST 1.47.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## kernlab 0.9-33 2024-08-13 [2] CRAN (R 4.5.0)
## KernSmooth 2.23-26 2025-01-01 [3] CRAN (R 4.5.0)
## knitr 1.49 2024-11-08 [2] CRAN (R 4.5.0)
## ks 1.14.3 2024-09-20 [2] CRAN (R 4.5.0)
## labeling 0.4.3 2023-08-29 [2] CRAN (R 4.5.0)
## lambda.r 1.2.4 2019-09-18 [2] CRAN (R 4.5.0)
## later 1.4.1 2024-11-27 [2] CRAN (R 4.5.0)
## lattice 0.22-6 2024-03-20 [3] CRAN (R 4.5.0)
## lazyeval 0.2.2 2019-03-15 [2] CRAN (R 4.5.0)
## leafem 0.2.3 2023-09-17 [2] CRAN (R 4.5.0)
## leafgl 0.2.2 2024-11-13 [2] CRAN (R 4.5.0)
## leaflegend 1.2.1 2024-05-09 [2] CRAN (R 4.5.0)
## leaflet 2.2.2 2024-03-26 [2] CRAN (R 4.5.0)
## leaflet.providers 2.0.0 2023-10-17 [2] CRAN (R 4.5.0)
## leafsync 0.1.0 2019-03-05 [2] CRAN (R 4.5.0)
## LearnBayes 2.15.1 2018-03-18 [2] CRAN (R 4.5.0)
## leidenAlg 1.1.4 2024-10-17 [2] CRAN (R 4.5.0)
## lifecycle 1.0.4 2023-11-07 [2] CRAN (R 4.5.0)
## limma 3.63.8 2025-03-03 [2] Bioconductor 3.21 (R 4.5.0)
## littler 0.3.20 2024-03-23 [2] CRAN (R 4.5.0)
## lme4 1.1-36 2025-01-11 [2] CRAN (R 4.5.0)
## lobstr 1.1.2 2022-06-22 [2] CRAN (R 4.5.0)
## locfit 1.5-9.12 2025-03-05 [2] CRAN (R 4.5.0)
## logger 0.4.0 2024-10-22 [2] CRAN (R 4.5.0)
## lwgeom 0.2-14 2024-02-21 [2] CRAN (R 4.5.0)
## magic 1.6-1 2022-11-16 [2] CRAN (R 4.5.0)
## magick 2.8.5 2024-09-20 [2] CRAN (R 4.5.0)
## magrittr 2.0.3 2022-03-30 [2] CRAN (R 4.5.0)
## mapproj 1.2.11 2023-01-12 [2] CRAN (R 4.5.0)
## maps 3.4.2.1 2024-11-10 [2] CRAN (R 4.5.0)
## MASS 7.3-65 2025-02-28 [3] CRAN (R 4.5.0)
## Matrix 1.7-2 2025-01-23 [3] CRAN (R 4.5.0)
## MatrixGenerics 1.19.1 2025-01-09 [2] Bioconductor 3.21 (R 4.5.0)
## MatrixModels 0.5-3 2023-11-06 [2] CRAN (R 4.5.0)
## matrixStats 1.5.0 2025-01-07 [2] CRAN (R 4.5.0)
## maxLik 1.5-2.1 2024-03-24 [2] CRAN (R 4.5.0)
## mclust 6.1.1 2024-04-29 [2] CRAN (R 4.5.0)
## memoise 2.0.1 2021-11-26 [2] CRAN (R 4.5.0)
## memuse 4.2-3 2023-01-24 [2] CRAN (R 4.5.0)
## metapod 1.15.0 2024-10-29 [2] Bioconductor 3.21 (R 4.5.0)
## methods * 4.5.0 2025-02-25 [3] local
## mgcv 1.9-1 2023-12-21 [3] CRAN (R 4.5.0)
## microbenchmark 1.5.0 2024-09-04 [2] CRAN (R 4.5.0)
## mime 0.12 2021-09-28 [2] CRAN (R 4.5.0)
## miniUI 0.1.1.1 2018-05-18 [2] CRAN (R 4.5.0)
## minqa 1.2.8 2024-08-17 [2] CRAN (R 4.5.0)
## miscTools 0.6-28 2023-05-03 [2] CRAN (R 4.5.0)
## mixtools 2.0.0.1 2025-03-08 [2] CRAN (R 4.5.0)
## modelr 0.1.11 2023-03-22 [2] CRAN (R 4.5.0)
## msigdbr 7.5.1 2022-03-30 [2] CRAN (R 4.5.0)
## multcomp 1.4-28 2025-01-29 [2] CRAN (R 4.5.0)
## multicool 1.0.1 2024-02-05 [2] CRAN (R 4.5.0)
## munsell 0.5.1 2024-04-01 [2] CRAN (R 4.5.0)
## mvtnorm 1.3-3 2025-01-10 [2] CRAN (R 4.5.0)
## nlme 3.1-167 2025-01-27 [3] CRAN (R 4.5.0)
## nloptr 2.1.1 2024-06-25 [2] CRAN (R 4.5.0)
## nnet 7.3-20 2025-01-01 [3] CRAN (R 4.5.0)
## nnls 1.6 2024-10-23 [2] CRAN (R 4.5.0)
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## numDeriv 2016.8-1.1 2019-06-06 [2] CRAN (R 4.5.0)
## openssl 2.3.2 2025-02-03 [2] CRAN (R 4.5.0)
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## OSTA 0.99.0 2025-03-12 [1] Bioconductor
## OSTA.data 0.99.2 2025-03-12 [2] Github (estellad/OSTA.data@d82e4e6)
## paletteer 1.6.0 2024-01-21 [2] CRAN (R 4.5.0)
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## parallel 4.5.0 2025-02-25 [3] local
## patchwork 1.3.0 2024-09-16 [2] CRAN (R 4.5.0)
## pbapply 1.7-2 2023-06-27 [2] CRAN (R 4.5.0)
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## pbmcapply 1.5.1 2022-04-28 [2] CRAN (R 4.5.0)
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## pkgconfig 2.0.3 2019-09-22 [2] CRAN (R 4.5.0)
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## SFEData 1.9.1 2024-12-19 [2] Bioconductor 3.21 (R 4.5.0)
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## shinydashboard 0.7.2 2021-09-30 [2] CRAN (R 4.5.0)
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## SingleCellExperiment 1.29.2 2025-03-07 [2] Bioconductor 3.21 (R 4.5.0)
## SingleR 2.9.6 2025-02-16 [2] Bioconductor 3.21 (R 4.5.0)
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## SpaceTrooper 0.1.0 2025-03-12 [2] Github (drisso/SpaceTrooper@3d5ec24)
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