Appendix A โ Acknowledgments
For authors and citation details, see Appendix D.
The authors also thank Aaron T. L. Lun for feedback, advice, as well as his substantial contributions to the Bioconductor ecosystem; Abby Spangler, Madhavi Tippani, and Brenda Pardo for initial work and discussions on Visium data analysis workflows and preprocessing procedures carried out at the Lieber Institute for Brain Development; and members of the Bioconductor Core Team and community for computational assistance and advice. In addition, the authors thank readers from the Bioconductor and wider research communities for feedback, suggestions, and contributions.
This book is built using BiocBook, developed by Jacques Serizay for building Quarto books with Bioconductor. More details on BiocBook can be found in this demo.
This book is inspired by the Orchestrating Single-Cell Analysis with Bioconductor (OSCA) book (Amezquita et al. 2020) on analysis workflows for single-cell data using R and Bioconductor, available here.
Details on data preprocessing procedures for 10x Genomics Visium data can be found in our related online book Visium data preprocessing.
Feedback and suggestions may be provided as GitHub issues for discussion with the maintainers.