Platform-agnostic analyses
28
Multi-sample
OSTA
Welcome
Introduction
1
Introduction
2
Spatial omics
3
Interoperability
4
Infrastructure
5
Importing data
6
Datasets
Sequencing-based platforms
7
Introduction
8
Quality control
9
Processing
10
Deconvolution
11
Workflow: Visium DLPFC
12
Workflow: Visium CRC
13
Workflow: Visium HD
14
Workflow: spatialLIBD
Imaging-based platforms
15
Introduction
16
Segmentation
17
Quality control
18
Processing
19
Neighborhood analysis
20
Cell communication
21
Workflow: Xenium
22
Workflow: CosMx
Platform-agnostic analyses
23
Dimension reduction
24
Clustering
25
Spatially variable genes
26
Gene/feature-set signatures
27
Spatial statistics
28
Multi-sample
Cross-platform analyses
29
Introduction
30
Registration
31
Imputation
32
Workflow: Xenium + Visium
Appendices
A
Acknowledgments
B
Related resources
C
Session information
Table of contents
References
Platform-agnostic analyses
28
Multi-sample
28
Multi-sample
References
Back to top
27
Spatial statistics
29
Introduction