Imaging-based platforms
20
Workflow: Imaging-based dataset
PrinciplesSTA
Welcome
Preamble
Introduction
1
Introduction
2
Spatial transcriptomics
3
Bioconductor data classes
Sequencing-based platforms
4
Overview
5
Load data
6
Quality control
7
Normalization
8
Feature selection
9
Dimensionality reduction
10
Clustering
11
Spot deconvolution
12
Spatial co-localization
13
Differential expression
14
Code summary: Analysis steps
15
Workflow: Human DLPFC
16
Workflow: Mouse coronal
17
Workflow: spatialLIBD
Imaging-based platforms
18
Overview
19
Load data
20
Workflow: Imaging-based dataset
Appendices
A
Acknowledgments
B
Related resources
Table of contents
20.1
Introduction
References
Imaging-based platforms
20
Workflow: Imaging-based dataset
20
Workflow: Imaging-based dataset
20.1
Introduction
Workflow for imaging-based spatial transcriptomics dataset
References
Back to top
19
Load data
A
Acknowledgments