References

Lun, Aaron T L, Davis J McCarthy, and John C Marioni. 2016. “A Step-by-Step Workflow for Low-Level Analysis of Single-Cell RNA-seq Data with Bioconductor.” F1000Research 5: 2122. https://doi.org/10.12688/f1000research.9501.2.
Maynard, Kristen R., Leonardo Collado-Torres, Lukas M. Weber, Cedric Uytingco, Brianna K. Barry, Stephen R. Williams, Joseph L. Catallini II, et al. 2021. “Transcriptome-Scale Spatial Gene Expression in the Human Dorsolateral Prefrontal Cortex.” Nature Neuroscience. https://doi.org/10.1038/s41593-020-00787-0.
McCarthy, Davis J, Kieran R Campbell, Aaron T L Lun, and Quin F Wills. 2017. “Scater: Pre-Processing, Quality Control, Normalization and Visualization of Single-Cell RNA-seq Data in R.” Bioinformatics 33 (8): 1179–86. https://doi.org/10.1093/bioinformatics/btw777.
McInnes, Leland, John Healy, and James Melville. 2018. UMAP: Uniform Manifold Approximation and Projection for Dimension Reduction.” arXiv 1802.03426 (v2). https://arxiv.org/abs/1802.03426.
Pardo, Brenda, Abby Spangler, Lukas M. Weber, Stephanie C. Hicks, Andrew E. Jaffe, Keri Martinowich, Kristen R. Maynard, and Leonardo Collado-Torres. 2021. “spatialLIBD: An r/Bioconductor Package to Visualize Spatially-Resolved Transcriptomics Data.” bioRxiv. https://doi.org/10.1101/2021.04.29.440149.