Principles of Spatial Transcriptomics Analysis with Bioconductor

Published: September 29, 2024

Welcome

This is the website for the online book Principles of Spatial Transcriptomics Analysis with Bioconductor.

This book provides interactive examples and discussion on key principles of computational analysis workflows for spatial transcriptomics data using Bioconductor in R. The book contains chapters describing individual analysis steps as well as extended workflows, each with examples including R code and datasets.

The book is organized into several parts, consisting of introductory materials, and analysis steps and workflows for sequencing-based and imaging-based spatial transcriptomics platforms.

Additional materials on analysis workflows for non-spatial single-cell data, as well as further introductory materials on R and Bioconductor, can be found in the related book Orchestrating Single-Cell Analysis with Bioconductor (OSCA).