Best Practices for Spatial Transcriptomics Analysis with Bioconductor

Welcome

This is the website for the online book ‘Best Practices for Spatial Transcriptomics Analysis with Bioconductor’.

This book provides several examples of computational analysis workflows for spatially resolved-transcriptomics (SRT) data, using the Bioconductor framework within the R programming language. The chapters contain details on individual analysis steps as well as complete workflows, with example datasets and R code that can be run on your own laptop.

The book is organized into several parts, including background, individual analysis steps, and example workflows.

Additional details on single-cell analysis workflows as well as introductory material on R and Bioconductor can be found in the related book Orchestrating Single-Cell Analysis with Bioconductor (OSCA).